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johnthomas75's Projects

alsf-scpca icon alsf-scpca

Management and analysis tools for ALSF Single-cell Pediatric Cancer Atlas data.

applied-ml icon applied-ml

Code and Resources for "Applied Machine Learning"

awesome-datascience icon awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

cellannotationtutorial icon cellannotationtutorial

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

csbb-shiny icon csbb-shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

data-science-ipython-notebooks icon data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

deep-learning-drizzle icon deep-learning-drizzle

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

deep-learning-in-r icon deep-learning-in-r

Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization

deepmedic icon deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

deepsurv icon deepsurv

DeepSurv is a deep learning approach to survival analysis.

dl_workshop icon dl_workshop

The materials for the Deep Learning in Biology workshop put on by Alex Lee, David Nicholson, and Ben Heil

enhancedvolcano icon enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

expacc icon expacc

Code repository for the paper "Exploring the Accrual Landscape by Open Science"

ffq icon ffq

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

freecodecamp icon freecodecamp

freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.

ggdensity icon ggdensity

An R package for interpretable visualizations of density estimates

gggenomes icon gggenomes

A grammar of graphics for comparative genomics

gghoriplot icon gghoriplot

A user-friendly, highly customizable R package for building horizon plots in ggplot2

handson-ml2 icon handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

homemade-machine-learning icon homemade-machine-learning

🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

kedro icon kedro

A Python framework for creating reproducible, maintainable and modular data science code.

mspt icon mspt

MSPT: Motion Simulator for Proton Therapy

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