John 's Projects
Scripts to generate automated QC scores, based on criteria from the 2019 TIGRlab DWI working group
Backup Repository for R and Matlab code I happen to use
Bin-Organized Decoding (edit Bae&Luck, 2018).
code and data for posts from https://garstats.wordpress.com
Predicted brain age analysis for Shahab et al. 2018
A template for a CONSORT flow chart in R
Convert DICOM images to BIDS
:brain: DTI-NODDI: Create NODDI maps from DTI (either "FA and MD" or "L1, L2, and L3")
dwi preprocessing
EEG Data analyses in R
PyTorch implementation of FastSurferCNN
This repository contains the scripts used in the manuscript titled "Comparing the stability and reproducibility of brain-behaviour relationships found in Canonical Correlation Analysis and Partial Least Squares within the ABCD sample"
MRI brain extraction tool
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Lab manual for the Contextual Dynamics Laboratory at Dartmouth College
Lab Manual for the Aly Lab at Columbia University
📝 A nicely formatted LaTeX preprint template
R implementation of the Lesion Quantification Toolkit (LQT; Griffis et al. 2021)
Code & short tutorial for modified multi-scale entropy analysis
Mouse-tracking plugin for OpenSesame
myPLS toolbox - PLS analysis for medical image processing
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images! Complements the work in Neuroimage by Pomponio et al. (2019).
This repository contains the core functions from neuropower in a python package.
The scripts of control energy analysis on pnc dataset
Predict using the PRoNTo toolbox. Supports both regression and classification, and different predictive models.