Coder Social home page Coder Social logo

Johan Zicola's Projects

crispr_cas9_arabidopsis icon crispr_cas9_arabidopsis

Step by step to generate CRISPR-Cas9 transgenic lines in Arabidopsis thaliana with useful scripts to facilitate primer design

make_pseudogenome icon make_pseudogenome

Generate pseudogenomes in fasta format for Arabidopsis accessions based on a VCF file.

ncbi_tutorial icon ncbi_tutorial

How to use the NCBI ressources from the command line and not be lost in the NCBI huge documentation

opm_transcriptome_assembly icon opm_transcriptome_assembly

Pipeline of the de novo transcriptome assembly of three larval stages of the oak processionary moth (OPM) (Thaumetopoea processionea)

random_music icon random_music

If you find time consuming the transfer of mp3 music files from your PC to your mp3 player and you would like a quick selection of random songs for the day, this program is for you. This python script allows to select a defined number of mp3 files in a random and recursive manner and transfer them on the selected output directory. The program use the built-in Tkinter library to offer a GUI. It requires python2 to be installed on your computer and to click on the script file.

rdna_copy_number icon rdna_copy_number

Pipeline to assess the number of rDNA copies from Arabidopsis thaliana based on short reads

repenrich2 icon repenrich2

RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

rosette_analysis icon rosette_analysis

Perform segmentation of RGB images of Arabidopsis rosettes and calculate values of green and red to assess relative chlorophyll content. Provides also area of the rosettes.

splitreader icon splitreader

Split-read pipeline for the identification of non-reference TE insertions with TSDs

srna_spike_in_design icon srna_spike_in_design

Contains scripts used to design and analyze small RNA spike-in oligonucleotides as described in Lutzmayer, Enugutti and Nodine (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data, Scientific Reports

srna_vesicles_maize_pollen icon srna_vesicles_maize_pollen

Scripts related to the paper Characterization of exosome-like vesicles from maize pollen and their potential role in sRNA trafficking

summarizemd icon summarizemd

Generate summary (TOC) for an existing MD document.

tepid icon tepid

Transposable element polymorphism identification

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.