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ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

ballgown_code

analysis code used in Ballgown paper

conifer

CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.

isoview

Visualization and clustering of DNA transcript data

mdts

R package for detection of de novo deletions in targeted sequencing trios

mdtsdata

Repository of raw simulated data used in MDTS vignette

polyester

quant

recountnnls

Tx Abundance Using recount2 Summary Measures Visa NNLS

recountnnlsdata

Necessary annotation to run recountNNLS

recountnnlspaper

Repository for code used to create analyses and figures for the recountNNLSpaper

swirl_regex

Tutorial for using regex in R, taught using the R tutorial package Swirl

ukbb_pan_ancestry

Analyses conducting GWAS across the UKBB diverse superpopulations