John Chilton's Projects
Abstract and presentation material for the Biometrics Open Source Conference 2015
An Ansible role for managing a Galaxy (http://galaxyproject.org) server.
Extra stuff to help bootstrap a Galaxy server.
An Ansible role is for configuring the base operating system useful for running Galaxy.
An Ansible role for managing a Galaxy (http://galaxyproject.org) Tool Shed server. For a role to install Galaxy itself, see https://github.com/galaxyproject/ansible-galaxy
Generating Docker containers from bioconda on the fly with Travis cron-job feature.
Collection of Galaxy wrappers for Bamtools
Best-practice pipelines for fully automated high throughput sequencing analysis
Big Data Bag Utilities
A python library for interacting with CloudMan and Galaxy API
Easily launch CloudMan and CloudBioLinux clusters with no manual configuration
Puppet Config for Deploying biocloudcenral (https://github.com/chapmanb/biocloudcentral)
Conda recipes for the bioconda channel.
Official git repository for Biopython (converted from CVS)
Galaxy wrapper for bwa mem
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
This project is meant to be used to launch a VM, configured it via a CloudBioLinux flavor (with initial focus on Galaxy and CloudMan), and upload data to it. This project is the successor of the galaxy-vm-launcher.
git repo tracking the Galaxy project's CloudMan mercurial repository at https://bitbucket.org/galaxy/cloudman
This project contains a set of scripts and config files I am using to configure CloudMan for MSI's private OpenStack cloud.
Fork of collectl taliored for applications at MSI.
Repository for CWL Specfications
Conda recipes maintained by the Galaxy IUC.
The source code for my CV/resume.
Test bed for CWL conditionals effort