jmcbroome Goto Github PK
Name: Jakob McBroome
Type: User
Bio: Bioinformatician, Data Scientist, and OSS Developer
Name: Jakob McBroome
Type: User
Bio: Bioinformatician, Data Scientist, and OSS Developer
Repository for automated flagging of new lineages for pango designation.
Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
Streamlit webapp for the annotation of Nextstrain Auspice v2 JSON with lineage labels based on genotype representation.
Sequential regulatory activity predictions with deep convolutional neural networks.
Various unsorted scripts and tools related to various projects
Conda recipes for the bioconda channel.
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit
Repository of scripts used to benchmark BTE.
A jupyter Binder repository containing documentation and example analyses for Big Tree Explorer (BTE)
Primary analysis pipeline for ultra-accurate sequencing data
Repository containing code exploring the use of citation context information extracted from academic and scientific work for Retrieval-Augmented Generation (RAG).
Repository containing code for analyzing global SARS-CoV-2 transmission for publication.
Scripts for analysis of purifying selection across SARS-CoV-2 genes using global phylogenies.
Interpretation aids for genomic epidemiology
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
highly-efficient & lightweight mutation signature matrix aggregation
Scripts and pipeline for phasing of long-read expression data from interspecific hybrids.
Code and information for constructing influenzavirus Mutation Annotated Trees (MATs)
Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA.
Notebooks and materials for manuscript results replication.
A Discord chatbot that supports popular LLMs for text generation and ultra-realistic voices for voice chat.
Streamlit webapp for generation of Nextstrain JSON from the global SARS-CoV-2 phylogeny.
Files used for comparing the performance of matUtils to related tools
A Discord bot which talks to Large Language Model AIs running on oobabooga's text-generation-webui
Workflows and files for simulation of SARS-CoV-2-like pandemic data
Consensus sequences for each Pango lineage
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.