jkbonfield Goto Github PK
Name: James Bonfield
Type: User
Company: Wellcome Trust Sanger Institute
Location: Cambridge, UK
Name: James Bonfield
Type: User
Company: Wellcome Trust Sanger Institute
Location: Cambridge, UK
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Read CRAM v3 and v2 in node or in the browser
Scripts for the CRAM 3.1 paper benchmarking
Test files for validating a CRAM decoder
Exploration of controlled loss of quality values for compressing CRAM files
Fastq compression tool
Specifications of SAM/BAM and related high-throughput sequencing file formats
Custom compression for CRAM and others.
A larger set of test data for htscodecs
C library for high-throughput sequencing data formats
Benchmarking of htslib and other tools
Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.
Summarises strace output
A *failed* IOCCC entry for 2002
A standalone and lightweight C library
Miscellaneous scripts and code for working on the MPEG genome-compression AHG
Pangenome explorations
A self-paced, quantum computing learning journey for high school students and above.
rANS coder (derived from https://github.com/rygorous/ryg_rans)
Realigns SAM/BAM/CRAM files to fix pairwise vs multiple alignment issues.
Samtools with CRAM support (inherited from staden package io_lib).
Note: tabix and bgzip binaries are now part of the HTSlib project.
TurboBench Compression Benchmark
The htslib.org web site
A massively spiffy yet delicately unobtrusive compression library.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.