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basdi

Bayesian Sample Drift Inference. Drift compensation algorithm for PALM/STORM data.

cellcutter

chioso

cyclegan

Image-to-Image Translation in PyTorch

dbscan_tf

DBSCAN algorithm implemented in TensorFlow.

dlpij

ImageJ plugin for DLP control

dlpjava

A java wrapper for PortabilityLayer.dll, the library for controlling DLP.

drizzle

elegy

A High Level API for Deep Learning in JAX

example-imagej-command

A simple Maven project implementing an ImageJ command

ijoverlay

An simple alignment & overlay plugin for ImageJ

inventory

Use google drive as a backend for lab inventory

lacss

A deep learning model for single cell segmentation from microsopy images.

lacss_jax

The JAX version of LACSS

lmdeconv

SMLM (single molecule localization microscopy) data analysis.

ml-notebooks

Extra notebooks for ECE-GY 6143

mmmal

Micromanager plugin for controlling Olympus IX type microscopes.

mmmstudio

Minimal components of mmstudio (Micro-Manager) to allow read/write of the image data without GUI

models

Models and examples built with TensorFlow

mpscript

mvp

octane

Octane is a ImageJ plugin for processing PALM/STORM data

octane-analyze

octane-cli

octane-core

A set of JAVA classes useful for single-molecule localization image analyses.

octaneview

Imagej plugin to display octane-core data

sc_models

simple-pytree

storm-analysis

Zhuang lab STORM movie analysis code

trackmate-lacss

A plugin of a plugin. A cell detector for TrackMate