jinmiaochenlab Goto Github PK
Name: Jinmiao Chen's Lab
Type: Organization
Bio: single cell and AI for precision immunology
Jinmiao Chen's Lab's Projects
batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
bone_marrow_aging
clusterx
ClusterX: Fast clustering by automatic search and find of density peaks
cyclex
Scripts to reproduce Yong Kee's Thesis
cytofkit
cytofkit: an integrated flow/mass cytometry data analysis pipeline
cytofkit2
cytofkit2-1
cytofkit_analysis_data_code
The data and analysis scripts used in cytofkit paper
disco_learning
Tell you how to use DISCO effectively
discotoolkit
discotoolkit_py
Python version of DISCO toolkit
ezsinglecell
GUI implementation for Seurat using shiny
ezsinglecell2
fastintegration
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
genex
graphst
graphst_tutorials
harmony
heart_aging
The codes for the manuscript about heart aging
mcgc
mpath
Mpath: an algorithm for constructing multi-branching cell lineages from single-cell data
mpath-analysis-of-human-pre-dc
nni_brain_code
onesense
pygat
Pytorch implementation of the Graph Attention Network model by Veličković et. al (2017, https://arxiv.org/abs/1710.10903)
rphenograph
Rphenograph: R implementation of the PhenoGraph algorithm
sc-qc
Quality control for Single-cell RNA-seq data
sc2virus
Identify virus infected cells in 10X output
scgumi
sctm
scTM: A package for topic modelling in transcriptomics data
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