Jianan Lin's Projects
solve an intron position error in ballgownrsem.R from https://github.com/alyssafrazee/ballgown
Interactive NBA and NCAA Shot Charts with R and Shiny
Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
A tool to identify CLIP-seq peaks
Dimer is a Python-based package for testing differential methylation in MeRIP-Seq data.
iCount, protein-RNA interaction analytics
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model
Config files for my GitHub profile.
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
https://towardsdatascience.com/merge-data-frames-in-python-r-725c0f874147
Related to my post on Medium (https://towardsdatascience.com/consider-multicollinearity-in-my-model-or-not-7aca16e74773)
Python client for NBA statistics located at stats.nba.com
An interactive graphing library for R
PRAS: predicting functional targets of RNA binding proteins based on CLIP-seq peaks
Medium source code and data
Simple Python version management
RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Riprap Predict RNA structural disruptions induced by single nucleotide variants
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
A short tutorial on how to use RSEM
RNA-seq aligner
"If your experiment needs a statistician, you need a better experiment." ā Ernest Rutherford
ATAC-seq data TSS enrichment score calculation