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booleandoi

booleandynamicmodeling

Java library to simulate Boolean Dynamic models

breastcancermodel

This program simulates the ER+ breast cancer network in Zañudo et al. 2017 (https://www.biorxiv.org/content/early/2017/10/27/176214).

breastcancermodelv2

This program simulates the ER+ PIK3CA mutant breast cancer network models in Zañudo et al. 2020.

cdecmx2020-networkbiology

cdecmx2021-networkbiology_obesitygenes

cellfatereprogramming

Java project related to the paper "Cell fate reprogramming by control of intracellular network dynamics" (http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004193)

fileclasses

Java library to make reading, writing and deleting files easier

fvs_python3

johnsoncyclealgorithm

Java library that implements the Jonhson Cycle algorithm and adapts it to the search for stable motifs.

quinemccluskeyalgorithm

Java library that implements the Quine McCluskey Algorithm for finding prime implicants of a Boolean function

stablemotifs

Java library that implements the attractor finding method described in Chaos 23 (2) 025111, and the control method described in https://doi.org/10.1371/journal.pcbi.1004193

th_update_7_1_15

node networks and cycle networks used to find stable motifs in discrete biological models