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annovar

Annovar scripts (with some hand-made utilities!)

awesome-cancerevolution

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-public-datasets

A topic-centric list of HQ open datasets.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

clonalevolution_repos

Some software about clonal evolution (to test!)

customization

Some miscellaneous config files...

dataviz

A book covering the fundamentals of data visualization.

emt_score_calculation

flowct

FlowCT package

geo-data-download

Code to download microarray data from the GEO database given the GSE and GPL ids.

guanrank-r

(unofficial version)

misc-tools

onboarding

ptcl

Peripheral T-cell Non-Hodgkin Lymphoma classification

python_data_science_master_unav

Repositorio para almancenar los contenidos del master Python Data Science de la UNAV, principalmente todo lo relacionado con Python, Jupyter y Docker.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

single-cell-pseudotime

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

smart-variant-filtering

strelka

Strelka2 germline and somatic small variant caller

svviz2

for visual evaluation of read support for structural variation

varscan_addings

Some additional scripts for varscan caller

vbamacros_excel

vcf-simplify

A python parser to simplify and build the VCF (Variant Call Format).