No module named 'dateutil' about dnabert

[jerryji1993]

Hi @ryao-mdanderson,

Thanks for reporting this issue. Please kindly ensure that you have properly installed all required package dependencies before training the model, as the error message suggests that one or more module is missing.

Let me know if there are additional questions.

Best,
Jerry

[ryao-mdanderson]

Hello @jerryji1993 :

I fixed the missing python modules. Thank you very much.

However, I hit a new error message in testing 2.2 Model training as the following.
Just FYI, I ran the test in HPC compute node, the node does not have internet access. May you please kindly direct me how to fix missing dna6 module name?

<class 'transformers.tokenization_dna.DNATokenizer'>
Traceback (most recent call last):
File "run_pretrain.py", line 885, in
main()
File "run_pretrain.py", line 789, in main
tokenizer = tokenizer_class.from_pretrained(args.tokenizer_name, cache_dir=args.cache_dir)
File "/risapps/noarch/dnabert/20210826/src/transformers/tokenization_utils.py", line 377, in from_pretrained
return cls._from_pretrained(*inputs, **kwargs)
File "/risapps/noarch/dnabert/20210826/src/transformers/tokenization_utils.py", line 479, in _from_pretrained
list(cls.vocab_files_names.values()),
OSError: Model name 'dna6' was not found in tokenizers model name list (dna3, dna4, dna5, dna6). We assumed 'dna6' was a path, a model identifier, or url to a directory containing vocabulary files named ['vocab.txt'] but couldn't find such vocabulary files at this path or url.