Jennifer Liddle's Projects
Various bits of arduino code
Process Illumina instrument data into SAM/BAM/CRAM files.
iRODS client programs and API
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Bitsand is an online booking system for live role play events. It was initially written for the Lions faction in the LT system, but it can now be used by any faction or guild.
Maintenance scripts used with the htslib/samtools/bcftools repositories
:house_with_garden: Open source home automation that puts local control and privacy first.
Raspberry Pi python to take in USB GPS data and Bluetooth GPS data and save them
Specifications of SAM/BAM and related high-throughput sequencing file formats
C library for high-throughput sequencing data formats
Remote telemetry sending data back to a central server
IOS client for Hydranet
Generate and process BAM files from Illumina sequencing instrument files
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
iixi : Jennifer's Intelligent X-Carve Interface
Miscellanous scripts and programs
Perl DBIx binding to a warehouse housing data from multiple LIM systems
C code to convert from National Grid Reference to Latitude and Longitude
NPG Conda recipes and tools
Tools for managing HTS (BAM and CRAM) format files in iRODS.
Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
QC checks and metrics for Illumina NGS data
Processing and analysis of data coming from Illumina sequencing machines
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
Process and Pipe Pipeline Panacea
P4 Process Monitor
An example of Python using Tkinter. Parses a URL into its component parts.
Filter and calibration programs for Illumina BAM files
Perl iRODS Client Wrapper Library
Pi Pico W providing a web page controlling stepper motors connected to a remote manual ATU