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cd_metabolomics_datavis

fasta_reader

Standard Fasta Reader Built in Python

iapi

Instrument Application Programming Interface

mass.standard.viewer

A Standard viewer for Proteome discoverer 2.2 peptide ID data. It should be used to visualize the shift in retention time, delta M and Xcorr value between standard runs

partial-seq-search

Match Partial peptide Sequences to parent protein of a fasta file

probocor

correlation analysis of protein increases and metabolite increases between samples

proteomics-metadata-standard

The Sample to Data file format for Proteomics

r.i.d.a.r

This little piece of code filters through all of the MS1 scans of an MGF file to identify if all of the associated reporter ions are present. If the reporter ions are present then a fold change identification is run. If the fold change is higher than the set threshold, the entire MS1 will be written to a new MGF file that decreases the search time and file size when compared to the original file. This ensures that scans that cannot be quantified are removed and the overall file is de-cluttered.

read_pd_output

Reads the tab spearated text converted PD output file into the basic data representation

sps_vs_isolation

Plotting the SPS% Accuracy vs the % Isolation Interference