jefferislab / nblast_clusters_online Goto Github PK
View Code? Open in Web Editor NEWExplore clusters from Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases, online in 3D
Explore clusters from Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases, online in 3D
We could then have a tickbox in the composition table so that users can see only the neurons they want.
Moved from jefferislab/NBLAST_on-the-fly#28.
In response to helpmail from Rachel Wilson in nat-user.
Added to About page.
Biorxiv one is on title banner.
It would be useful for navigation purposes to display recently visited clusters. Implementation wise, this would probably have to be some JavaScript parsing some kind of cookie.
Due to the way the WebGL pages are constructed, the very large WebGL information comes before the rest of the page's HTML, resulting in an almost blank screen while the 3D data is downloaded. It would be better if the 3D data was loaded last, perhaps with a placeholder 'loading...' image, so that the user could look at the rest of the information on the page while waiting.
Moved from jefferislab/NBLAST_on-the-fly#30
In chrome, the webgl loads but it's not possible to interact with it. In Safari, the webgl page fails to load.
I've tried other webgl demos with no problem on either browser.
Updates to their URLs mean that the neuron links no longer work. C.f. jefferislab/NBLAST_on-the-fly#72
Moved from jefferislab/NBLAST_on-the-fly#29.
Moved from jefferislab/NBLAST_on-the-fly#31:
http://flybrain.mrc-lmb.cam.ac.uk/si/nblast/clusters/superclusters/11/
i.e. all mAPT etc neurons should co-cluster
Could links to VFB viewer be added to the cluster composition table?
http://flybrain.mrc-lmb.cam.ac.uk/si/nblast/clusters/clusters/902/
The top 10 clusters table in nblast on-the-fly links to the clusters online pages, so it would be good to also have links back to VFB from those pages, similar to the ones in nblast on-the-fly results, as it's likely users will navigate clusters that way.
http://flybrain.mrc-lmb.cam.ac.uk/si/nblast/on-the-fly/#query_all=VGlut-F-400093
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