Name: Joe Romano
Type: User
Company: University of Pennsylvania
Bio: Assistant Professor of Informatics @ UPenn | Translational bioinformatics, computational toxicology & systems pharmacology
Twitter: jdromano2
Location: Philadelphia, NY
Blog: romanolab.org
Joe Romano's Projects
Joe Romano's Emacs configuration
Successor to ASAP (doi:10.1186/1471-2105-9-103). A phylogenomic solution for investigating the evolutionary history of a set of (potentially related) genes.
Demo Git repository for Week 13 in BMIN 5250
Collection of autoencoder models trained on Connectivity Map data
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
Utilities and scripts for preprocessing data sources in ComptoxAI
Basic interactive Linux tutorial created for Helpline and CDC staff
Clinical trial generalizability project
A library and toolkit for common representation and analysis of gene expression profile data
Data simulation software that creates data sets with particular characteristics
Joe Romano's personal website
Joe Romano's personal web page
A Neo4j movies React application with backends in Python/Flask and Node/Express.
GNN applications in predictive toxicology - use-case study for Tox21 QSAR modeling
Code and data used in PSB 2016 submission regarding venom taxonomies
Terminal-based ETL toolkit for graph databases
Professional online profile of Sarah E. Prehn, DDS
Command line tool for querying SemMedDB (stored in local MySQL database)
STK - A semantic toolkit for ontologies
Library and command line tool for interacting with OWL2 ontologies, aimed at supporting AI applications of bioontologies.
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
TPOT with a simple multilayer perceptron classifier
VenomKB - A centralized knowledge base for computational toxinology
Administration dashboard for VenomKB's back-end database
Repository containing the code used to build the databases on VenomKB
VenomKB
Python package to perform data analysis for the VenomSeq workflow