Name: Jeronymo Dalapicolla
Type: User
Company: @UFPBoficial
Bio: Professor at Universidade Federal da Paraíba
Interests: R, Python, Phylogeography, Phylogenetics, Modeling and Simulations, Landscape Genomics
Twitter: jdalapicolla
Location: João Pessoa, Paraíba, Brazil
Blog: https://mamiferosufpb.weebly.com/
Jeronymo Dalapicolla's Projects
Script for estimating sample size for a germplasm/seeds bank (BAG) using allele frequency and genetic diversity of wild species/population based on SNPs
Pipelines e scripts para análises em Bioinformática
Perl script for running multiple iBPP and BPP instances
Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)
Scripts and Suplemmentary Information used in the my Ph.D. thesis
Species concepts and taxonomic practice in the integrative taxonomy era: an example using South American rodents
A variational framework for inferring population structure from SNP genotype data.
Pipelines for analyzing genomic or transcriptomic data
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Script to edit file .loci from ipyrad to run in BP&P
Three-steps tutorial for filtering genomic data, estimating genetic structure, and calculating genetic diversity using a vcf
my blog
Suit of R-scripts to perform landscape genomic analyses
Scripts in R for Landscape Genomics Analyses v.2
Scripts in R for analyses of Identification of SNPs candidates and GEA and GPA studies - PART 4 in LANDSCAPE GENOMICS PIPELINE
Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE
Script for estimating Effective Population Size (Ne) using Linkage Desequilibrium in StrataG package
Programs to analyse NGS data for population genetics purposes
Population Genomics Pipeline used for SNPs data from VCF files.
Pipeline to run analyses of Population Connectivity with a list of shared loci or haplotypes and Species Distribution Models
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
R Port of psmc
A short tutorial on using R + markdown
Scripts with comments in Portuguese for performing Species Distribution Models using MaxEnt in 'biomod2' package
A pipeline for de novo assembly of population-level sequence capture datasets.
Scripts and Datasets for Phylogenomics of spiny rats - Genus Proechimys