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absehrd

agedbrain

Code and files for reproducing the analysis presented in "Neuropathological and transcriptomic characteristics of the aged brain," the platform paper for the Aging, Dementia, and TBI Study.

att_ss

Experiments, data and analysis on the interactions between attention and surround suppression

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

benchscofi

Package which contains implementations of published collaborative filtering-based algorithms for drug repurposing.

big-bench

Beyond the Imitation Game collaborative benchmark for measuring and extrapolating the capabilities of language models

biogpt

catalog

Made with Manubot catalog (please add your manuscript!!)

cdom

Identify commonly mutated protein domains in a given Mutation Annotation Format file.

ceres

Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens

challenge-analysis

A template project for post-challenge analysis with template R markdown files describing important analyses.

cnf_brousseau_hippo

Mutation analysis of cNF in humans

covid-chestxray-dataset

We are building an open database of COVID-19 cases with chest X-ray or CT images.

cross-modal-ssl-htnet

csbc-pson-dcc

Data coordination resources for the NCI CSBC and PS-ON consortia

data-engineer-resume-latex

A LaTeX resume template, tailored for the recent graduate who aspires to be a Data Scientist/Engineer.

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

druid

DRUg Indication Discoverer

ecarenet

gatk

Official code repository for GATK versions 4 and up

gene_exp_viewer

This is a link to the Rshiny tool

genie

Validation and processing of GENIE files: https://www.synapse.org/genie

gooddoc

A Template for Clear and Simple Documentation of Bioinformatics Code

iatlas.api.client

jhu-biobank

Data and code required to analyze JHU Biobank Data

kairos

kairos: NF Analysis Explorer

kairos_sandbox

markov-link-method

Combining information between destructive measurement techniques

microrna_variants