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Jawahar's Projects

atac-seq icon atac-seq

Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.

cepireg icon cepireg

Our comprehensive database integrates data from scRNA seq and sc-ATAC seq, identifying cis-regulatory elements (CREs) through comparison with ENCODE, Epimap, GWAS Catalog, and other datasets. By connecting transcription factors (TFs), CREs, and target genes, cEpiReg unveils hidden regulatory links crucial for understanding AD pathogenesis.

chip-seq icon chip-seq

ChIP-seq analysis pipeline encompassing data processing, quality control, alignment, peak calling, annotation and motif analysis.

drosagenxplorer icon drosagenxplorer

R Shiny Application for Interactive Exploration of Sample Metadata and Counts Data

phenotypic-clustering icon phenotypic-clustering

Explore disease relationships and similarities by utilizing Human Phenotype Ontology Annotation (HPOA) data. This could potentially offer insights into disease classifications, genetic associations, and potential therapeutic targets.

python-projects icon python-projects

Explore versatile applications of Python, providing real-world solutions through innovative problem-solving. Connect, explore, and dive into a portfolio of my Python skills. Questions or feedback? Feel free to reach out to me @ https://www.linkedin.com/in/jawahar-mahendran/

rna-seq icon rna-seq

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

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