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Hi there 👋

My name is Jan [jan] 🇩🇪.

Research

I obtained my PhD from Imperial College London in 2021 for my dissertation Computational modelling of diffusion magnetic resonance imaging based on cardiac histology. The work was carried out at the Department of Aeronautics (who sponsored my PhD studies) in collaboration with the Royal Brompton Hospital, supported by a grant from the British Heart Foundation.

During my research I investigated and developed methods to create realistic virtual models of the microstructure of the myocardium (heart muscle). I then used these models as input to numerial simulations of diffusion, to simulate in-vivo diffusion MRI experiments. Most of my work is published here on GitHub, so feel free to browse my repositories.

Code snippets

I dislike the way GitHub gists are displayed and much prefer GitLab snippets, which have a designated title (not just the file name) and a Markdown-enabled description. Have a look at some of my code snippets.

Some of my GitHub statistics

Github Stats

Top Langs

Jan N Rose's Projects

altacv icon altacv

Yet another alternative curriculum vitae/résumé class with LaTeX

cell-morphing icon cell-morphing

Morphing algorithm to grow and shrink segmented cell objects

chebpy icon chebpy

A Python implementation of Chebfun

chebroots icon chebroots

Recursively finding all roots of continuous functions using Chebyshev polynomials

diffusion-models icon diffusion-models

Analytical and random walk models of diffusion in permeable layered media

doi icon doi

The small doi package for linking to doi.org

dtpy icon dtpy

Diffusion tensor class in Python

github-flavored-markdown-to-html icon github-flavored-markdown-to-html

Convert markdown to HTML using the GitHub API and some additional tweaks with Python. Comes with full formula support and image compression.

gitignore icon gitignore

A collection of useful .gitignore templates

latexdiff icon latexdiff

Compares two latex files and marks up significant differences between them. Releases on www.ctan.org and mirrors

lumen-slicer icon lumen-slicer

Methods to analyse lumina (tubular geometries) by slicing along their centreline

mmm-xkcd icon mmm-xkcd

MagicMirror² module to display the daily or random web comic of XKCD.

pyvista icon pyvista

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

raybox icon raybox

An implementation of the Williams2005 ray-box intersection algorithm

rngen icon rngen

MATLAB Random Number Generator

rwcdti icon rwcdti

Random Walk for cardiac Diffusion Tensor Imaging

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