jami-erickson / scrnaseq_cd8tcells_cmv

Code for Erickson et al., Competition but not cross-competition shape the CD8+ T cell response in transplant patients following cytomegalovirus reactivation.

scRNAseq_CD8Tcells_CMV

Erickson et al, Competition but not cross-competition shape the CD8+ T cell response in transplant patients following cytomegalovirus reactivation

Scripts to reproduce figures shown in manuscript, starting from CellRanger outputs

One script with three different data sets utilizing Seurat v3

Raw and processed data files have been deposited in the NCBI’s Gene Expression Omnibus and are accessible through GEO series accession number GSE167825. (https://www.ncbi.nlm.nih.gob/geo/query/acc/cgi?acc=GSE167825).