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ampliconclipper

AmpliconClipper is an alignment postprocessor that removes PCR primers from SAM alignments and discards reads with major errors.

ascp_utils

utils to download data from NCBI/ENA

atlas-utils

tools for microbiome data analysis

awesome-algorithms

A curated list of awesome places to learn and/or practice algorithms.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

bam-manipulator

Easily perform various operations on BAM files

benchmark

Bioinformatics scripts

bioconda-recipes

Conda recipes for the bioconda channel.

biostack-suits

utils for building pipelines

blast-utils

utils to manipulate blast6out files

blast2bam

blast_table2xml

Convert blast m6 format to xml for blast2go

c-algorithms

A library of common data structures and algorithms written in C.

clusterprofiler

statistical analysis and visulization of functional profiles for genes and gene clusters

crassphage-kit

crAssphage-kit: identify crAss-like phage in assembled metagenome viral contigs.

dbcan-kit

CAZymes annotation using dbCAN

denoise-kit

denoise amplicon sequencing data with USEARCH unoise3

div-utils

div-utils: tools for microbiome data analysis

dix-seq

Dix-seq: An integrated pipeline for fast amplicon data analysis

docker-resources

Docker resources collection. docker资源汇总

dockerfiles

dotfiles

Dotfiles

draft

C++ standards drafts

dx-toolkit

DNAnexus platform client libraries.

emapper-utils

emapper-utils: utils for parse emapper result

fastool

Simple and quick FastQ and FastA tool for file reading and conversion

fastq-tools

Small utilities for working with fastq sequence files.

fastx-utils

fastx-utils using klib

flye-kit

long reads assembly with Flye and Pilon

fxtract

Extract sequences from a fastx file given a subsequence or identifier