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Jaideep Joshi's Projects

apache-spark-tutorials icon apache-spark-tutorials

This repo contains my learnings and practice notebooks on Spark using PySpark (Python Language API on Spark). All the notebooks in the repo can be used as template code for most of the ML algorithms and can be built upon it for more complex problems.

cloud-pipeline icon cloud-pipeline

Cloud agnostic genomics analysis, scientific computation and storage platform

cromwell icon cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

demo-pipeline icon demo-pipeline

Bioinformatics pipeline examples on Kubernetes using Argo and Kubeflow Pipelines

e2e-pipeline icon e2e-pipeline

End-to-End, Real-time, Advanced Analytics Big Data Reference Pipeline using Spark, Spark SQL, Spark ML, GraphX, Spark Streaming, Kafka, NiFi, Cassandra, ElasticSearch, Redis, Tachyon, HDFS, Zeppelin, iPython/Jupyter Notebook, Tableau, Twitter Algebird. See https://github.com/fluxcapacitor/pipeline/wiki for Setup Instructions.

examples icon examples

Kubernetes application example tutorials

ezdemo icon ezdemo

HPE Ezmeral Deployment tool for demos

fdgap icon fdgap

five-dollar-genome-analysis-pipeline

gatk icon gatk

Official code repository for GATK versions 4 and up

gemmaker icon gemmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

gemmaker_demo icon gemmaker_demo

Use case for running the SystemsGenetics/GEMmaker workflow on a kubernetes cluster

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