jafors Goto Github PK

aoc21

Advent of Code 2021

arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

bioconda-recipes

Conda recipes for the bioconda channel.

dna-seq-neoantigen-prediction

Snakemake workflow for neoantigen prediction

dna-seq-varlociraptor

Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor

fgff

hla-la

Fast HLA type inference from whole-genome data

homer_chipseq

A ChipSeq pipeline mostly based on HOMER

microphaser

neoepiscope

predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data

rna-seq-kallisto-sleuth

rna-seq-salmon-deseq2

RNA-seq workflow using salmon and deseq2

rna-seq-slamseq

Snakemake workflow for slamDunk toolkit

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

rna-seq-variant-calling

GATK best practice for rna-seq variant calling

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

varlociraptor

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

vembrane