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alphafold_non_docker

Open source code for AlphaFold.

azahar

A PyMOL plugin for construction, visualization and analysis of glycan molecules. https://www.ncbi.nlm.nih.gov/pubmed/27549814

deepscm

A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict antibody viscosity.

dl_binder_design

Fork of dl binder design

eggnet-equivariant-graph-of-graph-neural-network

equibind

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

graylab_config

This repository serves as a storage space for lab-wide resources, such as shell aliases, useful scripts, etc. Please include a descriptive comment for everything you add to this repository.

immunebuilder

Predict the structure of immune receptor proteins

interactiverosetta

A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites

jade2

General repository for python modules and scripts to aid in the design, analysis, and modeling of biomolecules.

matplotlib

matplotlib: plotting with Python

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

parapred

Paratope Prediction using Deep Learning

plotnine

A grammar of graphics for Python

protein_seq_des

Code for our paper "Protein sequence design with a learned potential"

proteinmpnn

Code for the ProteinMPNN paper

py_protein_utils

Python utilities for handling Rosetta output and PDB files

pyigclassify

Code for original PyIgClassify

pymol-script-repo

Collected scripts for Pymol

rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

scrabble_helper

This was a GUI I wrote in my free time to beat my friend Ian in Scrabble for the first time in my lifetime. It was still a close game. :)

seaborn

Statistical data visualization using matplotlib