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iueayhu's Projects

ampvis icon ampvis

A package to visualise amplicon data

checkm icon checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

fwmfg icon fwmfg

Freshwater microbial field guide

heatmapper icon heatmapper

Heatmapper - Make heatmaps of biological communities

mctoolsr icon mctoolsr

Microbial community analysis tools in R

mwas icon mwas

Perform microbiome-wide association studies with a variety of models

phyloseq icon phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

seqenv icon seqenv

Assign environment ontology (EnvO) terms to short DNA sequences

sickle icon sickle

Windowed Adaptive Trimming for fastq files using quality

stamp icon stamp

Statistical Analysis of Metagenomic Profiles

tax2tree icon tax2tree

Automated taxonomy decoration onto a tree

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