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aperitif

APERITIF is a fully automatically pipeline transforming information (diagnoses, medication, procedures, laboratory results, patient gender and age) from free-text eligibility criteria of a single study into a CQL query. The query is sent to an instance of the server Blaze to identify the number of eligible patients in the data base of Blaze.

artdecor-vs-to-cs

convert ArtDecor ValueSets to FHIR CodeSystems that contain the codes that have been selected in the respective valueset

athenaconceptmaps

automatedstoragesystemtestprotocol

This repository provides our generic test protocol for the integration test of ASS.

cross-walk-analysis-icd-10-gm

edqm2fhir

Convert the EDQM Standard Terms to FHIR CodeSystems and ValueSets

ehrbase

enumstammdatengenerator

fhir-marshal

fhir-marshal is a lightweight service for FHIR Resource Validation with profile allowlisting and terminology server connection.

fhir-populator

A tool to load a lot of FHIR resources from the Simplifier into a "naked" FHIR server and rewrite the version corresponding to the package.json!

fhir-term-samples

fhir-termserver-backup

Backup Resources on a terminology server that uses FHIR

fhir-ts-batch

Upload many terminological resources to FHIR Terminology Servers!

fhir2emx

FHIR2EMX is a webbased Tool to convert HL7 FHIR Questionnaires (STU 3) into MOLGENIS EMX Tables.

fhirlock

This project adds authorization functionality to the HAPI-FHIR-Server. It's based on the JPA server example provided by HAPI. The access control by authorization is added as an additional layer in form of an interceptor. It uses an external policy service built with Java Spark and a MongoDB as policy storage for evaluation.

fml2mirth

gmds2023_terminologyserver-challenge

hl7-deid

mappathonvalidatorclient

This project provides a Java Client for the Mappathon Validator Service. There are two ways to integrate the client into your matching pipeline.

mdrcupid

MDRCupid - A Configurable Metadata Matching Toolbox

mentored

mentored (MEtadata aNnotaTiOn pREDiction) is a BiLSTM neural network trained to predict UMLS Codes to a given metadata description. The network consists of three layers: embedding layer, BiLSTM with 2 cells and a linear classifier.

metacheck-core

This project contains a core library to validate metadata quality.

mettertron

mimic2fhir

mimic2fhir converts data from MIMIC-III database (PostgreSQL) to HL7 FHIR resources.

mimic4fhir

mimic4fhir converts data from MIMIC IV database (PostgreSQL) to HL7 FHIR R4 resources or the German Medical Informatics Initiative core data sets.

mirth-connect-docker

Mirth-Connect Docker container (+ Mysql container + PHPMyAdmin container)

odm2fhir

This repository contains a single XSLT file to transform CDISC ODM files to a HL7 FHIR Bundle. The current used versions are ODM 1.3.2 and FHIR STU3.

odm2samply

This repository contains XSLT files to transform CDISC ODM files to Samply.MDR Namespace XML. The current used version is ODM 1.3.2.

oncotree-fhir

Oncotree as a FHIR CodeSystem

ontoserver-keycloak

"The book" on configuring Keycloak to work with Ontoserver