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mcv21 avatar mcv21 commented on July 19, 2024

On .deb-based systems, an approach based on update-alternatives would probably be the way to go

from irods_client_icommands.

mcast avatar mcast commented on July 19, 2024

The need for this comes partly from our code, which needs to reach into different zones that may be on separate upgrade schedules.

An extra factor is the need for irods_environment.json > "irods_plugins_home" which we needed on old Ubuntu Precise with icommands in /opt/renci. This became incompatible at the user config file level with new Ubuntu Bionic icommands in /usr/bin.

As we have users who may run the commands from either OS with a shared homedir, and would prefer not to have another level of "which OS are we on? need to grab different config files!", it makes a window of time without a well-defined cutover date.

(Hoping this made sense - happy to clarify)

from irods_client_icommands.

kript avatar kript commented on July 19, 2024

Talking to other internal users, they would need to be able do an equivalent of ./configure --prefix=/opt && make && make install. If it were possible to build the iRODS client libraries and install them and the headers to /opt or /usr/local that should be enough.

This would be for building baton and samtools, as well as for building variable location icommands.

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