Inti Pedroso's Projects
Bayesian Analysis of Allelic Specific Expression
Readme Badges ā Gotta catch 'em all
Chef_solo routine to install numba
install pymc3 on a VM using chef_solo
This program allows to perform gene-set analyses with the results of the Connectivity Map project
This project develop a software for PhyloStratigraphy analyse and extends the original methodology in several ways, .e.g., into comparison across species.
a (possibly out-of-date) clone of Eigen3
This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details
ggplot for python
compositional data analysis and visualization toolbox
gwatools
Config files for my GitHub profile.
Personal website
Pythonic Perambulations website
A Small C library for reading PLINK genotype files.
Local Nearest Neighbot Information Estimator
a few miscellaneous functions I've found useful
Chef recipe to set up a data analysis-friendly Python virtual environment
The Shogun Machine Learning Toolbox (Source Code)
A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization
Here are some vagrant boxes I use for my development. Be welcomed to change or improve in any way!