interactivereport Goto Github PK

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bioinfograph

bioInfograph: an online tool to design and display multi-panel scientific figure interactively

celldepot

cellmap

cellxgene

An interactive explorer for single-cell transcriptomics data

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

csfinms

Integrated single cell transcriptomics of cerebrospinal fluid cells in early Multiple Sclerosis

deep_learning_best_practices

fundusnet

hsctgfb

STAT3 activation is central to TGF-β1 mediated primary human hepatic stellate cell activation

omicsview

OmicsView: omics data analysis through interactive visual analytics

omicsview0

python-cheatsheet

Comprehensive Python Cheatsheet

quickomics

Quickomics: exploring omics data in an intuitive, interactive and informative manner

rnasequest

rpy2

Interface to use R from Python

scrna-seq_notes

A list of scRNA-seq analysis tools

scrnaseq_de

scrnasequest

scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing

whitepapers

xomicsshiny

R Shiny application for cross omics data analysis

zsf1

High resolution molecular and histological analysis of renal disease progression in ZSF1 (fa/fa cp) rats, a model of type 2 diabetic nephropathy