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bamfilters

A tool to filter BAM files

bio-scribe

Performs basics operation from various file format

biscot

Bionano SCaffolding Correction Tool

boardion

corals-associated-data

fastoche

Easily get metrics from Fasta and Fastq files, compressed or not

fastxtend

A package to perform NGS quality control

fuzzy-lca-module

Module dedicated to LCA algorithms and taxonomy management

galop

GALOP - Genome Assembly using Long reads Pipeline

gmove

Gmove is a gene prediction tool

hapo-g

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

hibernatetools-gradle-plugin

Hibernate tools plugin to reverse engineering database from gradle

ig-file-io

kfir

locogse

A tool to estimate the genome size

magus

MaGuS (Map-Guided Scaffolding) is a map-guided scaffolder and a reference-free assembly quality evaluator.

microcyc-model

microscope-client-rest

microscope-model-client

nas

NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.

nclim-20102618b

ngl

ngl-dependencies

ngl-documentation

obo-herbspathway

obo-parser

A java parser for obo file format as provided by unipathway

orthodotter

Synteny plots (oxford grid)

pahang-associated-data

This repository contains all the scripts used to produce the paper's figures

pkgdb-model

readuntil