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Name: Inamul Hasan Madar
Type: User
Company: Korea University
Inamul Hasan Madar's Projects
annotables
R data package for annotating/converting Gene IDs
desra
An automated protocol to extract variation or expression from public NGS datasets
ensembl-pipeline
Job management for the Ensembl Genebuild pipeline
fastq.bio
An interactive web tool for quality control of DNA sequencing data
gene-ontology
User-friendly Gene Ontology annotations
ggplot2-book
The ggplot2 book
gi2017software
Software from GI2017
mergelanes
Merge fastq files split over lanes
metagenome
msigdf
Molecular Signatures Database (MSigDB) in a data frame
onco_lnc
oneliners
Useful bash one-liners for bioinformatics.
poap
Parallelized Open Babel & Autodock suite Pipeline
qqman
R code for creating Manhattan plots and Q-Q plots for GWAS
rnaseq
rsem_tutorial
A short tutorial on how to use RSEM
seurat
Tumor-Normal Variant Caller
solarplot
Mitochondrial Solar Plot
star-fusion
STAR-Fusion codebase
swefreq
Swedish Frequency resource for genomics website
tcga-codes
tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
tximport
Import and summarize transcript-level estimates for gene-level analysis
variantbam
Filtering and profiling of next-generational sequencing data using region-specific rules
vvp-pub
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
workshops
Bioconnector Workshops
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