Comments (1)
Maybe I should have used snakemake instead of doing dumb bash
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Related Issues (20)
- First Test on real dataset HOT 3
- Chimera detection #2 HOT 6
- Subsampling before chimera detection HOT 1
- Subsampling before chimare detection HOT 1
- Need to specify software versions for reproducibility HOT 1
- Need to update bwa to bwa-mem2 HOT 3
- Phyloseq installation is as long as SILVA indexing
- Not running on aarch64 HOT 1
- aarch64 - MK1C fail on minimal dataset HOT 1
- Running nanoasv smoothly
- add a citation file HOT 5
- Binary Realease ? HOT 3
- script should test for the presence of required binaries HOT 1
- Singularity version known Issue : WARNING: could not mount /etc/localtime: not a directory
- To do : Reimplement unknown sequences cluster discard HOT 1
- Should remove singleton before multiple alignements
- Docker image run with singularity. Error phyloseq R package : "Cannot open shared object" HOT 8
- No control over Porehcop cpu usage.
- Singularity keeps looking for bin outside the container HOT 3
- use vsearch option to eliminate a call to awk HOT 1
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