Comments (2)
I can't tell from the screenshot if we are seeing all the alignments or not, but there is no deletion in the alignments we can see at that location. Are some scrolled out of view? In any event IGV will show you the alignments, I think your question is really about the variant caller.
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Thanks robinso for the reply, correct there are no reads for deletion in the allignment bit seeen in vcf file.
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Related Issues (20)
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