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View Code? Open in Web Editor NEWCompute a phylogeny using EggNOG database
License: MIT License
Compute a phylogeny using EggNOG database
License: MIT License
This is for openjournals/joss-reviews#593, and is a bit of phylogenetic pedantry on my part.
Can you change the figure 1A to either show a simple 3 taxon star tree or, preferably, add a fourth taxon to the figure to make the tree interesting.
In assessing whether the package satisfies the installability criterion for openjournals/joss-reviews#593 I ran into a small road bump (I don't use phangorn, which is why this arose).
The install process halted with an error in installing igraph because of a lack of libxml2-dev on my system. It would be helpful for users if you provided a list of required system packages for each of the supported platforms since the R build systems are pretty unhelpful in pointing users in the right direction when things like this happen.
This is for openjournals/joss-reviews#593.
A review criterion is a statement of need: "Do the authors clearly state what problems the software is designed to solve and who the target audience is?"
Can you please make a clearer statement to this effect in paper.md and README.md.
In the Acknowledgements section "postgraduation" is missing the first 't'. Is this the formal name?
This is for openjournals/joss-reviews#593.
Please add DOIs for papers where they exist.
For openjournals/joss-reviews#593, can you please add something that satisfies "Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support"
A CONTRIBUTING.md and text in the README.md would be the best IMO.
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