icmlab Goto Github PK
Name: Institute of Cellular and Molecular Studies (ICM)
Type: User
Company: [email protected]
Location: Lugo
Blog: www.e-icm.net
Institute of Cellular and Molecular Studies (ICM)'s Projects
23andme2vcf
convert your 23andme raw file to VCF
beadarrayfiles
Python library to parse file formats related to Illumina bead arrays
burchardlab_tutorials
ciemat-bccg
III BASIC COURSE - CANCER GENOMICS: ARRAYS, SNP & CNV
cpsr
Cancer Predisposition Sequencing Reporter (CPSR)
crosspred
Methods for cross prediction
dnascan
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
docs
Para meter documentación y cosas importantes
genomelink-python
Genomelink Python SDK
gsa
Pipeline used for genetic analyses of Dutch IBD samples using the Illumina Global Screening array
gtc2vcf
Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL files to VCF
gtctovcf
Script to convert GTC/BPM files to VCF
gwa_tutorial
A comprehensive tutorial about GWAS and PRS
gwas_scripts
Codebook from my GWAS cookbook
illumina-array-protocols
processing illumina SNP arrays
imputationserver-docker
Docker Image for Michigan Imputation Server
kgp2anc
A protocol to estimate global ancestry starting from raw Illumina data
lassosum
LASSO for GWAS with summary statistics
ldpred
pipelines-iscan
Exploring Global Screening Array v2.0
prscs
Polygenic prediction via continuous shrinkage priors
r
R code for iScan GSA Genotyping Files
stranding
Determines genome stranding for sequences mapped to a human reference assembly
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
variant-calling-pipeline
HPC based pipelines for variant calling using GATK
variantspark
machine learning for genomic variants
vcf-to-23andme
Convert imputed DNA.Land VCF to 23andMe raw data format
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