Iara Souza's Projects
A repo for the BAMStats command, used as the tutorial for Dockstore
Repository for the ancestry analysis of essential genes in eukaryotes
parse FASTQC results
Applying classification algorithms to identify essential genes in model organisms.
Gene expression analysis for T. Cruzi
simple tool to parse VCF from gnomad project
Introduction to single-cell RNA-seq analysis
Explore Your R Libraries
Sex-specific transcriptional alteration profile of MDD
Shiny app to show results from MDD analysis (unpublished)
Functions to simplify microarray analysis
App produced at MIT-Hackathon for Covid-19 epidemiological surveillance
Script to evaluate MLE performance based on Monte Carlo simulations
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Just a pipeline for STAR alignment
Nextflow RNA-Seq pipeline with a filtering step
Exercício 2 da disciplina de Tópicos Avançados em Bioinformática
Exercício 3 da disciplina de Tópicos Avançados em Bioinformática III
Exercício 1 da disciplina de tópicos avançados em bioinformática III
A dataset to test the final project pipeline
Nextflow training material
R package for transcriptional analysis based on transcriptograms