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20kb-windows

bioconda-recipes

Conda recipes for the bioconda channel.

bismark-file-converter

This Bismark_to_Permeth_DSS.py script converts a Bismark format file to Permeth (percent methylation) and DSS format files.

cnv-caller

cnv_me

Copy number variation (CNV) caller utilizing BAM files

cpg_me

A whole-genome bisulfite sequencing (WGBS) pipeline for the analysis and QC of DNA methylation that goes from from raw reads to a CpG count matrix

dmrichr

An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

hic-analysis-of-egr2-as-rna

machine-learning-asd-predictors

Machine learning of DNA methylation predictors for Autism Spectrum Disorders (ASD)

machine-learning-sperm-dde-exposure

prader-willi-sydrome-mm10

sexchecker

Check sex of samples

snaf

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

umap-plots