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algospot

A fork of algospot to run a beginner bioinformatics programming tutor site, "fiveprime".

auto-lecture-note

ayb2

AYB2 -- All Your Base version 2. A base caller for the Illumina platform

bskim-2015-pre-mirna

Supplementary data for Kim et al. (2015), a TUT4/7 paper from the V. Narry Kim lab.

colab-biolab

echidna

On-the-fly stream parallelizer for FASTQ and FASTA processing

ecliptic

A generalized pipeline for CLIP-seq and PAR-CLIP analysis.

korail2

Korail (www.letskorail.com) wrapper for Python.

langdev.org

LangDev main website and SSO service

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

moves-daily-life

Plots how you spend your days from Moves data

nrclip

Analysis pipeline for CLIP-seq and ribosome profiling data

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing

rnarry

Simple tools for data analysis for molecular biology of RNA

sars-cov-2-transcriptome

Supplemental code for "the architecture of SARS-CoV-2 transcriptome" paper

seamlessf5

Helpers for smoother transitioning to multi-read FAST5 files

snubioinfo-test-git

tailseeker

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

xrdp

xrdp: an open source RDP server