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advanced_r

algorithms

Minimal examples of data structures and algorithms in Python

algorithms_and_data_structures

160+ Algorithm & Data Structure Problems using C++

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

bigsnpr

R package for the analysis of massive SNP arrays.

brainimmuneatlas

Overview of the scripts used to analyse the brainimmuneatlas data

cardioqtl

deepnet

Implementation of some deep learning algorithms.

deepnet-1

:exclamation: This is a read-only mirror of the CRAN R package repository. deepnet — deep learning toolkit in R

emacs.conf

my (very) personal emacs setup

exercises-in-programming-style

Comprehensive collection of programming styles using a simple computational task, term frequency

glmnet

:exclamation: This is a read-only mirror of the CRAN R package repository. glmnet — Lasso and Elastic-Net Regularized Generalized Linear Models. Homepage: http://www.jstatsoft.org/v33/i01/.

gsoc-2017

gtex_deconvolution

gwas-pipeline

This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.

hornet

Simple tools for unbiased allele-specific read mapping based on WASP by the Pritchard lab

interflex

Multiplicative Interaction Models Diagnostics and Visualization, Producing Flexible Marginal Effect Estimates

lc-all-solutions

My own leetcode solutions by python

ldsc

LD Score Regression (LDSC)

leetcode

leetcode-1

LeetCode In Action - Python (705+)

lintcode

LintCode Python

misc

Miscellany, mostly code supporting blog posts

ml-playground

Simple and easy-to-understand ml algorithm implementations

mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

neovim

Vim-fork focused on extensibility and agility.

oneliners

Useful bash one-liners for bioinformatics.

page-imputation

Pegasus Imputation Workflows for PAGE2

paletteer

🎨🎨🎨 Collection of most color palettes in a single R package

predixcan

PrediXcan Project