Comments (7)
Should be confidenceScores instead of confidentScores
from proxi-schemas.
I agree it should be plural.
But I'm also wondering if something more general is appropriate. PeptideAtlas does not store actual search engine scores, but rather only probabilities. It seems that in general probabilities or q-values or something like that it more useful than search engine scores anyway (e.g., what does a Mascot score of 35 mean again?) What about renaming this thing to something more like "confidenceScores" or "confidenceMetrics" or something like that? That could hold search engine scores or probabilities or q-values or whatever. What do you think?
from proxi-schemas.
@edeutsch, Im fine with confidenceScores
because is more generic. Check here the psm endpoint from PRIDE http://wwwdev.ebi.ac.uk/pride/proxi/archive/v0.1/psms?resultType=full&peptideSequence=YNPTWHCIVGR
from proxi-schemas.
Looks fantastic!
from proxi-schemas.
if you agree, we move to confidentScores
, please give me a 👍
from proxi-schemas.
@edeutsch can you take a look to this issue #67
from proxi-schemas.
@edeutsch PR #69 ready to be approved.
from proxi-schemas.
Related Issues (20)
- do we really stipulate a max pageSize? HOT 1
- Massive data files do not exist
- /peptidoforms still labeled getPeptides
- inconsistent count* in Peptidoform
- What should the compact form of /peptidoforms return? HOT 2
- Add 500 to the list?
- msrun and filename HOT 8
- species as query parameter? HOT 2
- Error status should contain only error code HOT 1
- Develop JSON Schema validator HOT 3
- Error status for multiple providers HOT 1
- PRIDE PROXI spectra returning mzs not in order HOT 3
- PRIDE USI without interpretation not working? HOT 1
- No attributes for spectra at PRIDE? HOT 2
- How should a spectrum status be used? HOT 2
- update specification and schemas
- Validator of the PROXI APIs implementations
- Improve documentation of the entry points in the swagger.yaml file
- Precursor m/z
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from proxi-schemas.