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andrewrobertjones avatar andrewrobertjones commented on August 21, 2024

@germa Please can we update the q-value term (below). Both of the units are wrong, I'm pretty sure there are no suitable units for a q-value.

Thanks Andy

[Term]
id: MS:1002354
name: PSM-level q-value
def: "Estimation of the q-value for peptide spectrum matches." [PSI:PI]
xref: value-type:xsd:double "The allowed value-type for this CV term."
is_a: MS:1002347 ! PSM-level identification confidence metric
relationship: has_units UO:0000166 ! parts per notation unit
relationship: has_units UO:0000187 ! percent
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive

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fawazghali avatar fawazghali commented on August 21, 2024

I have update the example file. @edeutsch can you please re-run the validator. Thanks. Fawaz

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germa avatar germa commented on August 21, 2024

Removed the units from the FDR and q-value terms in version 3.90.0 of psi-ms.obo

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fawazghali avatar fawazghali commented on August 21, 2024

Closed as a duplicate to #53

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