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arff2pandas

Load an ARFF file as a pandas DataFrame.

bigwig

bigwig repository

blog-snippets

Snippets for my blogs (https://guillenramirez.wordpress.com/ and https://engguillenramirez.wordpress.com/)

blog_snippets

Supplementary code for blog entries

brainrnacompartments

Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation

caspr

CASPR pipeline.

codingexercises

cris.py

Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.

crispeta

A really flexible tool to obtain CRISPR paired gRNAs on desired regions of a genome

crispresso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

eztracks

A script for plotting a single GTF annotation followed by grouped bed files

gat

Genomic Association Tester

genehtracker

Gene ID History Tracker

giggle

Interval data structure

giggle-docker

GIGGLE on docker

giggle-singularity

Tools for running GIGGLE on Singularity

git-novice

Software Carpentry introduction to Git for novices.

hicmatrix

hpoworkbench

Human Phenotype Ontology Workbench

hugoguillen.github.io

Hugo's personal webpage

imorns

Supplementary information for the article "Accurate Classification of Immunomodulatory RNA Sequences" (IJCNN 2017 conference)

ipythontoc

Create a table of contents for a iPython notebook

mageck-ibar

mageck-ibar is the analysis software for CRISPR/Cas9 with iBAR system applied library screening.

micro-course

Code for Informatics nano course

microbialcomposition

Supporting code

mimic3

A fast local neural text to speech engine for Mycroft

motif-clustering

Clustering motif models to remove redundancy

nb2py

Dumps marked code cells from a Jupyter notebook into a single .py file.

notebooks

Jupyter notebooks

otono2016

Material para el taller de Biocomputación de la Escuela de Otoño de Ciencias de la Comptuación, CICESE 2016.