hsiehph Goto Github PK
Name: PingHsun Hsieh
Type: User
Company: University of Minnesota
Bio: Assistant professor in the Dept. of GCD at the University of Minnesota, Twin Cities
Twitter: phhBenson
Location: Twin Cities
Blog: hsiehph.github.io
PingHsun Hsieh's Projects
alignmentplot_windowidentity
archanc
archanc-1
Benchmarking Methods for Detecting Archaic Admixture
asm-to-reference-alignment
estalleleage
estimate allele age using the ARG program Relate (Speidel et al. 2019)
estmutationrate
This is a simple pipeline to estimate rate of substitution using pairwise sequence alignments
genomestrip_snakemake
hsiehph.github.io
lastz-based-liftover-pipeline
local-ancestry-analysis-pipeline
using RFMix
merqury_pipeline
minidot
Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
newweb
pangeniepipeline
popfastaaa
Simple stand-alone programs for analysis of aligned Multi-FASTA formated files.
qc_illuminareads
ragtag_scaffolding
rd_custom_contig
Code for getting read depth-based copy number for a custom contig
rd_pipelines
selectionscan_sfs
A simple pipeline for selection scan using site-frequency-spectrum based methods
ssf_dts_caller
scale space filtering based CNV calling and genotyping
stdpopsim
A library of standard population genetic models
transcript2genemodel
wssd_sunk
Legacy codebase for WSSD and SUNK read depth file creation and analysis
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