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alphafoldx

Repo for DKU AlphaFold Research Project

chabpathways

functional metabolic pathways for cyanobacterial blooms

cobratoolbox

COnstraint-Based Reconstruction and Analysis toolbox

codingbooks

Programming books 3: Python、 Machine-Learning、 Deep-Learning、 NLP

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

cyanohabs

comparative genomics of blooming cyanobacteria vs non-blooming species

cyanonets

metabolic networks of select booming and non-blooming cyanobcteria

dictys

Context specific and dynamic gene regulatory network reconstruction and analysis

ecoli_multiple_growth_conditions

the mian repository for e.coli multiple growth conditions

generalchab

project to compare different algal composition and systems operation

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2--2019

handson-ml3

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

itis

tool to Identify TE Insertion Sites in genome

kleuren

Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees

leela-notes

李宏毅《线性代数》笔记，在线阅读地址 https://datawhalechina.github.io/leela-notes

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

meta-microbiome

A pipeline for analyzing metagenomic microbiome datasets

metagenomics-workshop

Metagenomics Workshop

microbiome

networkmodels

metabolic network model xml files

ntu-machine-learning

**大学李宏毅老师机器学习

ntu_ml2017_hung-yi-lee_hw

NTU ML2017 Spring and Fall Homework Hung-yi_Li 李宏毅老师 机器学习课程作业

paml-tutorial

paml documentation and tutorials

pymegan

Python package and wrapper around MEGAN6 CE's blast2lca

r

scanpy

Single-cell analysis in Python. Scales to >1M cells.

stream

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

tutorials

In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

vamb

Variational autoencoder for metagenomic binning

witod

A Tool for Within-Taxon Operational Taxonomic Unit (OTU) Diversity