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arichpur_cholera_clustering

bangladesh-cholera-serosurvey

Code and data from 'Vibrio Cholerae O1 Transmission in Bangladesh: Insights from a Nationally-Representative Serosurvey'

bgd_cholera_greyspots

Where are the greyspots in cholera surveillance in Bangladesh?

cfepi

Code related to "Perfect Counterfactuals for Epidemic Simulations" and the cfepi package

cholera-burden-change-africa

Public repository linked to manuscript on changes in the burden of suspected cholera from 2011-2020 in Africa

cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure

cholera-multiplex-panel

cholera-ors

Source Code and Data for 'Tracking Cholera through Surveillance of Oral Rehydration Solution Sales at Pharmacies: Insights from Urban Bangladesh'

cholera-systems-serology

A systems serology analysis of correlates of protection against cholera

cholera_burden_africa

cholera_burden_cascade

cholera_outbreaks_ssa

Cholera outbreaks in sub-Saharan Africa during 2010-2019: A Descriptive Analysis

cholera_positivity

Code and Data for Cholera Positivity Review

cholera_seasonality_ssa

cholera_waves_ssd

choleragenomics-africase

contessa

Contact Tracing Evaluation and Strategic Support Application

covid-dashboard-app

Interactive tool for visualizing COVID-19 intervention scenario models

covid-science-immuno

covid19-serodynamics

This repository will contain the dataset and code used to generate the analyses and figures for "Dynamics and significance of the antibody response to SARS-CoV-2 infection".

covid19_inferencetest

covid19_minimal

A minimal repository that contains everything needed to run the COVIDScenarioPipeline on fake data

covid19_nonustemplate

Template repository for creating a non-US setup for the COVID Scenario Pipeline

covid19_shenzhen_sero

covid19_test

covid19burdenfdmn

covidimportation

covidkutupalong

covidrtpcr

Analysis of RT-PCR sensitivity by day since exposure or symptom onset

covidscenariopipeline

Public shared code for doing scenario forecasting and creating reports for various governmental entities.