hooooooly Goto Github PK

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

banovichlab

Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).

build-your-own-x

🤓 Build your own (insert technology here)

classiccomputerscienceproblemsinpython

Source Code for the Book Classic Computer Science Problems in Python

cuimc-nyp_covid_autopsy_lung

datascience-portal

Use shinyproxy to achieve Rstudio Server Pro feature parity

dge_workshop

ds-cheatsheets

List of Data Science Cheatsheets to rule the world

gatk

Official code repository for GATK versions 4 and up

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

gatk4_wdl_script

GATK4 somatic variants discovery via wdl script based on broad institute

halfrost-field

✍🏻 这里是写博客的地方 —— Halfrost-Field 冰霜之地

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

learn

my learning journey

ligand-receptor-pairs

Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

lihang

Statistical learning methods, 统计学习方法(第2版)[李航] [笔记, 代码, notebook, 参考文献, Errata, lihang]

linear_algebra_with_python

Lecture Notes for Linear Algebra Featuring Python

numpy-ml

Machine learning, in numpy

pure-bash-bible

📖 A collection of pure bash alternatives to external processes.

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

python

All Algorithms implemented in Python

r_script

R script most for plotting

scell_lung_adenocarcinoma

This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

scendo_scovar_2020

This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignancies", Regner et al., 2021

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

scrna_smart_seq2

scw

HSCI/Catalyst Single-cell RNA-Seq Workshop

single-cell-bioinformatics

Course material in notebook format for learning about single cell bioinformatics methods

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

single_cell_analysis

Documents used for workshops on single cell analysis