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hoffmangroup's Projects

2020spikein icon 2020spikein

All code pertaining to the "Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls" manuscript

2022modtfbss icon 2022modtfbss

Public repository of additional scripts used in our expanded alphabet manuscript.

cla icon cla

Tools for Cell Lineage Analysis

genomedata icon genomedata

The Genomedata format for storing large-scale functional genomics data.

nour icon nour

Lab notebook for my Fall 2023 rotation in the Hoffman Lab

peako icon peako

Software for finding transcription factor binding motifs using knockout controls, in CUT&RUN data.

polyidus icon polyidus

Polyidus provides a framework to catch chimeric DNA sequences with a tale of python

segtools icon segtools

Package for analysis of genomic segmentations.

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