hoelzer Goto Github PK

2021-04-12_treemap

bed2bedpe

A simple py script from github.com/rki-mf1/covpipe2

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

covid_snp_catalogue

A small, rather hacky, script that takes a bunch of SARS-CoV-2 genomes and compares them to the RefSeq genome.

cv.js

D3/Bootstrap CV generator

cwl_viral_pipeline

dammit-nf

Containerized Nextflow implementation of the dammit de novo transcriptome annotation pipeline (http://dib-lab.github.io/dammit/)

darkq

A message queue for genomic surveillance

dfg

A LaTeX template for a basic DFG (Deutsche Forschungsgemeinschaft, German Research Foundation) grant proposal.

docker-compose-tutorial

docker_pipelines

Nextflow/Docker pipelines for "easy use"

epidope

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

epidope-1

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

faltwerk

A library for spatial exploratory data analysis of protein structures

fieldbioinformatics

The ARTIC field bioinformatics pipeline

hoelzer.github.io

My academic personal web page.

init

Initialize a new bioinformatics project structure and git control

mag

Assembly and binning of metagenomes

marine-phage-paper-scripts

mgnify-lr

Evaluation of long-read support for the MGnify pipeline

misc

A collection of littler helpers

nanovirus

A nextflow implementation of the assembly-free detection of viruses from nanopore data

nemo

NExt MOdule helper: a repository for Nextflow modules and helper scripts

nf-hmmsearch

A simple Nextflow workflow to perform hmmsearch on a given input set of genomes and HMMs

nf-minimap2

A small Nextflow example using minimap2.

nf_blast

A simple nextflow that performs blastn with Docker support

nf_example

A small example workflow to introduce Nextflow and Docker integration

phd-thesis

My PhD thesis from the University of Jena

pocp

Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.

sankey

Build a Sankey plot from an input CSV file